細胞内局在予測

細胞内局在については、様々なサイトで予測が可能。アミノ酸配列を事前に所持しておくこと。

以下はその中でも一般的に使われるサイト。サイトによっては予測できる生物、細胞内小器官などが異なる。

• WoLF PSORT (Horton et al., 2007)
  : General Eukaryotic Localization Prediction (based on PSORTII, iPSORT)
• pTARGET (Guda and Subramaniam, 2005)
  : Based on the occurrence patterns of protein functional domains and the amino acid compositional differences.
• PrediSi (Hiller et al., 2004)
  : Prediction of signal peptides and their cleavage positions
• ESLpred (Bhasin and Raghava, 2004)
  : SVM for Eukaryotics using Dipeptide composition & PSI-BLAST
• LOCtarget (Nair and Rost, 2004)
  : Database for structrual genomics targets
• PA-Sub (Lu et al., 2004)
  : Proteome Analyst Specialized Subcellular Localication Server
• SubLoc (Hua et al., 2002)
  : SVM prediction system based on amino acid composition alone
• TMHMM (Krogh et al, 2001)
  : Prediction of transmembrane helics in proteins
• TargetP (Emanuelsson et al., 2000)
  : Prediction for eukaryotics based on N-terminal signal sequences
• SignalP (Nielsen et al., 1997)
  : Predict the presence and location of signal peptides
• PSORT (Nakai et al., 1990s)
  : First computer program for subcellular location prediction